ISA-tools/Automacron
Motif finding algorithm and tool to find functionally relevant motifs in workflows.
Developer Profile
ISA-tools
Discovered public repositories for ISA-tools in the GitHub catalog.
ISA-tools/ISAValidatorWS
Restful Webservice for Validation of ISATab files.
ISA-tools/OntoMaton
OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.
ISA-tools/linkedISA
Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).
ISA-tools/BioFormats
BioFormat code developed at WebValley
ISA-tools/BioSharingUtils
A selection of tools to automatically update content in BioSharing.
ISA-tools/ISAcreatorPlugins
Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.
ISA-tools/NovartisMetastore
Connection code to the Novartis metastore
ISA-tools/biopy-isatab
Python parser for ISAtab, a biological file format for experimental metadata
ISA-tools/jUtils
jUtils, a miscellanea of small and handy general purpose utilities for Java
ISA-tools/Docbooks
Documentation
ISA-tools/HelpWebUtility
The web browser in this package has pretty basic functionalities, but is also quite flexible, and for in-app browsing, like that done in IntelliJ for instance, in order to navigate to help pages, it is perfect. I don't need any special JNI calls to invoke browsers therefore I don't introduce platform-dependent code into the codebase.
ISA-tools/MAGEToISAConverterWS
RESTful web service implementation for the MAGEtoISAconverter. You should
ISA-tools/graph2tab
graph2tab, a library to convert experimental workflow graphs into tabular formats
ISA-tools/Bio-Parser-ISATab
Parses ISA-Tab investigation file and dependent files into one big hash-based Perl data structure
ISA-tools/ISAtabErrorReporter
A GUI to display ISAtab errors, showing images of files and listing the errors clearly.
ISA-tools/Risa
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).
ISA-tools/MAGEtoISAconverter
Converter which can pull from ArrayExpress (by an accession number) or read local files and convert them to ISAtab. Lead by Philippe Rocca-Serra & Eamonn Maguire, University of Oxford
ISA-tools/isa-configurations
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
ISA-tools/ISAcreator
ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
ISA-tools/ISAvalidator-ISAconverter-BIImanager
The ISAvalidator, ISA converter and BII data manager tools
ISA-tools/ISAconfigurator
The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).
ISA-tools/BioInvIndex
The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).