CSB5/shotgun-metagenomics-pipeline
A pipeline for primary analysis of shotgun metagenomic sequencing data
Developer Profile
CSB5
Discovered public repositories for CSB5 in the GitHub catalog.
CSB5/GERMS_16S_pipeline
Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences
CSB5/splash
Scripts to analyze data from the SPLASH protocol for generating in vivo RNA interactome maps
CSB5/2015-do-hrsv
Supplementary Data for Do et al. (2015)
CSB5/TCGA-preprocessing
Public repository.
CSB5/OncoIMPACT
Cancer-omics Data Integration
CSB5/driver-benchmarking
Pipeline for mutation benchmarking of various softwares.
CSB5/basespace-bacterial-lofreq
Bacterial LoFreq Wrapper for Basespace
CSB5/csb5.github.io
github pages for csb5
CSB5/lofreq
LoFreq Star: Sensitive variant calling from sequencing data
CSB5/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
CSB5/EDDA
Power Your Design
CSB5/misc-scripts
Miscellaneous scripts
CSB5/decont
Decontaminate FastQ files
CSB5/vipr
Viral Pipeline Runner: >>> superseded by https://github.com/CSB5/ViPR2
CSB5/16s-arxiv-1210.3464
Auxiliary scripts for Ong et al. (2013): Species Identification and Unbiased Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences