BiGCAT-UM/Drug-Gene-Pathway-Network
Bachelor project of Bram van Steen
Developer Profile
BiGCAT-UM
Discovered public repositories for BiGCAT-UM in the GitHub catalog.
BiGCAT-UM/wp2lod
Code to convert WikiPathways to RDF.
BiGCAT-UM/PyWikiPathways
Python scripts for WikiPathways Web Services
BiGCAT-UM/RRegrs
Searching the best regression model using R (correlation filter, data scaling, best regression model, etc.)
BiGCAT-UM/RDMSV
Drug Markov Singular Values of Transition Probabilities in R
BiGCAT-UM/RDMMP
Drug Markov Mean Properties in R
BiGCAT-UM/RNCBO
Mapping ontology terms using BiOSS recommender
BiGCAT-UM/IntViz
Plugin to define visualization styles for Interactions.
BiGCAT-UM/ArrayAnalysis
Affymetrix microarrays of different technology versions are very often used in transcriptomics analysis. Quality control and normalization approaches do exist, especially as packages in Bioconductor/R. However: - Procedures are often different between teams. - They are not always easy to access as they run through command lines. - It is often not clear what the meaning of the specific settings and results are - They are not always usable for the newer technology types of arrays. To tackle this, we proposed an automated well-documented and user-friendly pipeline for Affymetrix microarray quality control and normalization.
BiGCAT-UM/PathSBML
A PathVisio plugin to import SBML models as SBGN-PD diagrams.
BiGCAT-UM/bridgedb-r
R package for BridgeDb
BiGCAT-UM/pathvisio-goelite-plugin
PathVisio plugin to perform gene ontology analysis