Arabidopsis-Information-Portal/GAG
Generates an NCBI .tbl file of annotations on a genome.
Developer Profile
Arabidopsis-Information-Portal
Discovered public repositories for Arabidopsis-Information-Portal in the GitHub catalog.
Arabidopsis-Information-Portal/hrgrn_webservices
Hormone ang Gene Regulatory Networks Web Services. Community Resource by The Noble Foundation
Arabidopsis-Information-Portal/comparative-genomics-services
Araport Comparative Genomics Services based on EnsemblePlant REST API.
Arabidopsis-Information-Portal/PMR_API
Adapter for PMR web services.
Arabidopsis-Information-Portal/PMR_Plotter
Draw plots as described by PMR web services
Arabidopsis-Information-Portal/adama_example
Example of building an ADAMA service inside an iPython notebook
Arabidopsis-Information-Portal/atted_science_app
Public repository.
Arabidopsis-Information-Portal/chromatin_states_to_jbrowse
ADAMA web-service wrapper to transform "Chromatin States" GFF3 data into JBrowse compatible JSON
Arabidopsis-Information-Portal/erik-old-test-app
Public repository.
Arabidopsis-Information-Portal/SeqLighter
BioJS based Sequence Viewer plugin for the GMOD JBrowse genome browser
Arabidopsis-Information-Portal/erik-test-app
Public repository.
Arabidopsis-Information-Portal/coge_webservices
ADAMA wrappers of CoGe Web Services RESTful API
Arabidopsis-Information-Portal/thalemine-list-services
ADAMA adapters that wrap several ThaleMine authenticated list webservices.
Arabidopsis-Information-Portal/agave-ncbi-blastdb
Handles creation of the BLAST database volume
Arabidopsis-Information-Portal/agave-ncbi-blast
Agave and Docker build files for the back end of our BLAST app
Arabidopsis-Information-Portal/intermine-data-validation
intermine-data-validation
Arabidopsis-Information-Portal/sequence-viewer
A protein sequence viewer with highlight and coverage capabilities written in javascript
Arabidopsis-Information-Portal/NtSeq
JavaScript (node + browser) bioinformatics library for nucleotide sequence manipulation and analysis.
Arabidopsis-Information-Portal/D3_Demo_Coexpression_Pathway_Matrix_App
Public repository.
Arabidopsis-Information-Portal/coexpression_pathway_matrix_api
Public repository.
Arabidopsis-Information-Portal/selectize.js
Selectize is the hybrid of a textbox and <select> box. It's jQuery based and it has autocomplete and native-feeling keyboard navigation; useful for tagging, contact lists, etc.
Arabidopsis-Information-Portal/araport-portal
Docker image for the Araport portal.
Arabidopsis-Information-Portal/Protein-App
This app displays a table of the proteins in the ThaleMine database.
Arabidopsis-Information-Portal/Gene-App
Araport app to return gene information from ThaleMine.
Arabidopsis-Information-Portal/Get_Sequence_App
Public repository.
Arabidopsis-Information-Portal/PhosPhAt-App
Displays tables containing protein phosphorylation data from PhosPhAt.
Arabidopsis-Information-Portal/ebi-interaction-viewer-app
Araport demo science app that uses the ADAMA layer to query interaction data from EBI
Arabidopsis-Information-Portal/ebi-intact-psicquic-service
ADAMA adapters for querying EBI IntAct PSICQUIC data
Arabidopsis-Information-Portal/Get_Sequence_API
An Araport API that uses Thalemine Query to retrieve a json file with the fasta sequence
Arabidopsis-Information-Portal/jcvi-araport11-services
ADAMA adapters for querying Araport11 annotation data
Arabidopsis-Information-Portal/sRNA_phasi_loci
sRNA phased loci app for Meyers Lab
Arabidopsis-Information-Portal/PhosPhAt-API
Allows access to protein phosphorylation data from PhosPhAt.
Arabidopsis-Information-Portal/KEGG-Pathway-App
Public repository.
Arabidopsis-Information-Portal/KEGG-Pathway-API
API access to KEGG pathway information from Araport
Arabidopsis-Information-Portal/thalemine-gene-services
Araport API that serves basic information about genes in ThaleMine.
Arabidopsis-Information-Portal/thalemine-protein-services
Araport API that serves basic information about proteins in ThaleMine.
Arabidopsis-Information-Portal/jcvi-qpcr-services
ADAMA adapters for querying JCVI Arabidopsis thaliana RT-qPCR expression data
Arabidopsis-Information-Portal/araport-agave-spec
Araport customizations to the Agave API Specification
Arabidopsis-Information-Portal/Intern-Hello-World
Sandbox for intern developers
Arabidopsis-Information-Portal/adama-example
A full example of Adama service
Arabidopsis-Information-Portal/Apollo
Genome annotation editor, with a Java servlet backend and a Javascript client that runs in a web browser as a JBrowse plugin
Arabidopsis-Information-Portal/araport_service_monitor
Drupal module for displaying status monitoring information about Araport Platform services
Arabidopsis-Information-Portal/araport-data-api-cv
Araport Data API controlled vocabulary for parameter names
Arabidopsis-Information-Portal/iplant_datastore_connect
Drupal module to allow easy enrollment of the iPlant DataStore into a user's Agave API Systems
Arabidopsis-Information-Portal/araport-file-browser-app
Public repository.
Arabidopsis-Information-Portal/araport-agave-docs
Swagger spec for Araport Agave Core APIs
Arabidopsis-Information-Portal/araport-prov
Design docs for ADAMA implementation of W3C PROV-DM
Arabidopsis-Information-Portal/rest_ensemblgenomes
EnsemblGenomes REST API ADAMA Passthrough
Arabidopsis-Information-Portal/adamalib
A Python library for using Adama
Arabidopsis-Information-Portal/autonaming_pipeline
This is the code for running the JCVI autonaming pipeline.